The directories AES, BFS, CP, LPS, LIB, MUM, NN, NQU, RAY, STO, and WP (see the
CUDA directory) contain benchmarks used in the ISPASS 2009 paper on GPGPU-Sim.
Their original sources are listed below.  For details on how to build and run
each benchmark, follow the instructions in the README.GPGPU-Sim file in each
subdirectory. Assuming all dependencies are satisifed, you can build all the
benchmarks by typing "make" in this directory.

AES

S. A. Manavski. CUDA compatible GPU as an efficient hardware
accelerator for AES cryptography. In ICSPC 2007: Proc. of IEEE Int’l
Conf. on Signal Processing and Communication, pages 65–68, 2007.

BFS:

P. Harish and P. J. Narayanan. Accelerating Large Graph Algorithms
on the GPU Using CUDA. In HiPC, pages 197–208, 2007.

CP:

http://www.crhc.uiuc.edu/IMPACT/parboil.php. 

DG:
T. C. Warburton. Mini Discontinuous Galerkin Solvers. 
http://www.caam.rice.edu/˜timwar/RMMC/MIDG.html.

LPS:

M. Giles. Jacobi iteration for a Laplace discretisation on a 3D structured
grid. http://people.maths.ox.ac.uk/˜gilesm/hpc/NVIDIA/laplace3d.pdf

LIB:

M. Giles and S. Xiaoke. Notes on using the NVIDIA 8800 GTX graphics
card. http://people.maths.ox.ac.uk/˜gilesm/hpc/

MUM:

M. Schatz, C. Trapnell, A. Delcher, and A. Varshney. High-throughput
sequence alignment using Graphics Processing Units. BMC Bioinformatics,
 8(1):474, 2007.

NN:

Billconan and Kavinguy. A Neural Network on GPU.
http://www.codeproject.com/KB/graphics/GPUNN.aspx. 

NQU:

Pcchen. N-Queens Solver. 
http://forums.nvidia.com/index.php?showtopic=76893

RAY:

Maxime. Ray tracing. http://www.nvidia.com/cuda.

STO:

S. Al-Kiswany, A. Gharaibeh, E. Santos-Neto, G. Yuan, and M. Ripeanu.
StoreGPU: exploiting graphics processing units to accelerate distributed
storage systems. In Proc. 17th Int’l Symp. on High Performance
Distributed Computing, pages 165–174, 2008. 

WP:

J. Michalakes and M. Vachharajani. GPU acceleration of numerical 
weather prediction. IPDPS 2008: IEEE Int’l Symp. on Parallel and
Distributed Processing, pages 1–7, April 2008.